In this study, we mainly introduce two salinity parameterization schemes used in Sea Ice Simulator (SIS), that is, isosaline scheme and salinity profile scheme. Comparing the equation of isosaline scheme with that of salinity profile scheme, we found that there was one different term between the two schemes named the salinity different term. The thermodynamic effect of the salinity difference term on sea ice thickness and sea ice concentration showed that: in the freezing processes from November to next May, the sea ice temperature could rise on the influence of the salinity difference term and restrain sea ice freezing; at the first melting phase from June to August, the upper ice melting rate was faster than the lower ice melting rate. Then sea ice temperature could rise and accelerate the sea ice melting; at the second melting phase from September to October, the upper ice melting rate was slower than the lower ice melting rate, then sea ice temperature could decrease and restrain sea ice melting. However, the effect of the salinity difference term on the sea ice thickness and sea ice concentration was weak. To analyze the impacts of the salinity different term on Arctic sea ice thickness and sea ice concentration, we also designed several experiments by introducing the two salinity parameterizations to the ice-ocean coupled model, Modular Ocean Model (MOM4), respectively. The simulated results confirmed the previous results of formula derivation.