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国家自然科学基金(11372042)

作品数:4 被引量:9H指数:2
相关作者:刘海燕樊桂萍更多>>
相关机构:北京理工大学校医院北京理工大学更多>>
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Local buckling analysis of biological nanocomposites based on a beam-spring model
2015年
Biological materials such as bone, tooth, and nacre are load-bearing nanocomposites composed of mineral and protein. Since the mineral crystals often have slender geometry, the nanocomposites are susceptible to buckle under the compressive load. In this paper, we analyze the local buckling behaviors of the nanocomposite structure of the biological materials using a beam-spring model by which we can consider plenty of mineral crystals and their interaction in our analysis compared with existing studies. We show that there is a transition of the buckling behaviors from a local buckling mode to a global one when we continuously increase the aspect ratio of mineral, leading to an increase of the buckling strength which levels off to the strength of the composites reinforced with continuous crystals. We find that the contact condition at the mineral tips has a striking effect on the local buckling mode at small aspect ratio, but the effect diminishes when the aspect ratio is large. Our analyses also show that the staggered arrangement of mineral plays a central role in the stability of the biological nanocomposites.
Zhiling BaiBaohua Ji
关键词:屈曲分析蛋白质复合物矿物晶体复合材料结构屈曲强度
甲状腺乳头状癌相关致病基因及microRNAs的筛选和生物信息学分析被引量:1
2017年
本研究利用美国国家生物技术信息中心(NCBI)基因表达综合数据库(GEO)下载获取甲状腺乳头状癌(papillary thyroid carcinoma,PTC)m RNA表达谱芯片(7例PTC样本VS 7例正常组样本,登录号为GSM85-215~GSM85228)及miro RNA高通量测序数据(3例PTC样本VS 3例正常组样本,GSM1388420~GSM138-8425)。通过Qlucore Omics Explorer(QOE)3.2、DAVID 6.7、STING 9.1、mi Records等分析软件对PTC差异基因及micro RNA进行综合生物信息学分析。筛选出来497个甲状腺乳头状癌相关致病基因及86个相关micro RNAs;其中,致病基因中上调表达的有257个,下调表达的有240个;micro RNAs中上调表达的有47个,下调表达的有39个。对其进行生物信息学分析发现,ERBB3、TNNT1、MYL1、POSTN基因及hsa-mi R-183-5p(ERBB4)、hsa-mi R-139-5p(SUV39H1)、hsa-mi R-152(MAML1)、hsa-mi R-1(FOXD3)、hsa-mi R-146b-5p(MEF2C)、hsa-mi R-152(DOT1L)、hsa-mi R-493-5p(FBXW7)、hsa-mi R-876-5p(PIK3R1)、hsa-mi R-183-3p(MDM2)、hsa-mi R-382-3p(CD80)、hsa-mi R-181b-5p(SIRT1)、hsa-mi R-874-5p(MTOR)、hsa-mi R-876-5p(GPRC6A)等micro RNAs-靶基因参与涉及Erb B信号通路、细胞凋亡信号通路、B细胞受体信号通路、磷脂酰肌醇代谢信号通路等,在PTC疾病发生发展中可能起着重要作用。从分子水平上分析甲状腺乳头状癌相关致病基因及micro RNAs,为揭示PTC发病机制、药物研发及临床诊断治疗提供新的思路和依据。
韩友霞樊桂萍季葆华刘海燕
关键词:甲状腺乳头状癌致病基因MICRORNAS生物信息学分析
Mechanical force drives the polarization and orientation of cells被引量:5
2019年
Collective cells are organized to form specific patterns which play important roles in various physiological and pathological processes, such as tissue morphogenesis, wound healing, and cancer invasion. Compared to single cell behaviors, which has been intensively studied from many aspects (cell migration, adhesion, polarization, proliferation, etc.) and at various scales (molecular, subcellular, and cellular), the multiple cell behaviors are relatively less understood, particularly in a quantitative manner. In this paper, we will present our recent studies of collective polarization and orientation of multiple cells through both experimental measurement and theoretical modeling, including those cell behaviors on/in 2D and 3D substrate/tissue. We find that the collective cell behaviors, including polarization, alignment and migration are closely related to local stress states in cell layer or tissue, which demonstrate the crucial roles of mechanical forces in the living organisms. Specifically, the cells prefer to polarize and align along the maximum principal stress in the cell layer, and the aspect ratio of cell increases with the in-plane maximum shear stress, suggesting that the maximum shear stress is the underlying driving force of cell polarization and orientation. This theory of stress-driven cell behaviors of polarization and orientation provides a new perspective for understanding cell behaviors in living organisms and the guideline for tissue engineering in biomedical applications.
Shijie HeXiaomeng LiBaohua Ji
关键词:COLLECTIVECELLBEHAVIORSCELLPOLARIZATIONCELLCELLMECHANOSENSING
A mechanical model of cell-substrate interaction
<正>It is widely accepted that cell induced traction forces at the cell-matrix interface play essential roles i...
Shijie He; Yewang Su; Baohua Ji; Huajian Gao;
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Quantification of the stiffness and strength of cadherin ectodomain binding with different ions被引量:3
2014年
The stiffness and strength of extracellular(EC) region of cadherin are proposed to be two important mechanical properties both for cadherin as a mechanotransductor and for the formation of cell-cell adhesion. In this study,we quantitatively characterized the stiffness and strength of EC structure when it binds with different types of ions by molecular dynamics simulations. Results show that EC structure exhibits a rod-like shape with high stiffness and strength when it binds with the bivalent ions of calcium or magnesium. However,it switches to a soft and collapsed conformation when it binds with the monovalent ions of sodium or potassium. This study sheds light on the important role of the bivalent ions of calcium in the physiological function of EC.
Zhiyang XuDechang LiBaohua Ji
关键词:钙粘蛋白分子动力学模拟
A mechanical model of cell-substrate interaction
It is widely accepted that cell induced traction forces at the cell-matrix interface play essential roles in c...
Shijie HeYewang SuBaohua JiHuajian Gao
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