In order to rapidly respond to the complex and mutational market, a new facility layout plan based on cellular manufacturing is proposed, which gives consideration to high efficiency and flexibility. The plan designs two phases of integrated cell layout, i.e., cell construction and cell system layout, on the condition of adding/removing machines. First, in view of the costs of logics and machine-relocation, the cell construction based on the alternative processing routes and intra-cell layout are integrated as a whole, which achieves cell formation, process planning and the intra-cell layout in a single step. Secondly, an approach of a continuous optimized multi-line layout for solving the cell system layout problem is proposed, which eliminates the coupling relationship from the machine-relocation and realizes an integrated design of the two phases of the cell layout. An application based on real factory data is optimally solved by the Matlab 7.0 software to validate and verify the models.